a***r 发帖数: 420 | 1 比较急,有用的帮助包子谢~!
我有一堆SNP,除了想知道它们的alleles外,还想具体一点知道他们的minor allele(如果有MAF就更好了)
形式最好是可以massive query的,比如一个file或者TextEntry一次输入1000+个SNP,获得表格形式的返回信息
望版上达人指教,谢谢:) |
s*r 发帖数: 2757 | 2 an easy way is biomart
www.ensembl.org/Multi/martview
it has also an R implementation. |
m******n 发帖数: 194 | 3 应该直接可以去ucsc genome browser下载SNPinfo,写个script直接比较就可以了 |
a***r 发帖数: 420 | 4 谢谢,非常有用的网页
可是,只能返回alleles和ancestral allele啊,我想要的是minor allele,还是有这
个选项我没看到@@
【在 s*r 的大作中提到】 : an easy way is biomart : www.ensembl.org/Multi/martview : it has also an R implementation.
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r********e 发帖数: 100 | |
s*r 发帖数: 2757 | |
a***r 发帖数: 420 | 7 very handy! It's ashamed that I didn't know that even though I use PLINK
very often...
Thank you very much! check baozi
【在 s*r 的大作中提到】 : then just use plink : http://pngu.mgh.harvard.edu/~purcell/plink/psnp.shtml
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