How to compare three gene lists, each with expression value or relationship? - Biology版 - 未名存档

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Biology版 - How to compare three gene lists, each with expression value or relationship?

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相关话题的讨论汇总
话题: lists话题: expression话题: gene话题: each

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T********g 发帖数: 505	1 I have three lists of genes, the number of identity of genes are not exactly same in each list. And each gene has it's own expresion value or relationship. I would like to know which two lists with expression values are closer or more similar. How can I get the answer? Which bioinformatic tool can I use? Thanks.
a*****x 发帖数: 901	2 可以把每个基因作为一个坐标轴，然后算3个点的距离吧。如果基因不平权，就给对应的坐标乘以一个系数。 exactly 【在 T********g 的大作中提到】 : I have three lists of genes, the number of identity of genes are not exactly : same in each list. And each gene has it's own expresion value or : relationship. I would like to know which two lists with expression values : are closer or more similar. How can I get the answer? Which bioinformatic : tool can I use? Thanks.
T********g 发帖数: 505	3 我统计不好，你讲的我不全懂。有没有现成的工具可以用？
w*******e 发帖数: 100	4 exactly Pearson correlation, spearman correlation 【在 T********g 的大作中提到】 : I have three lists of genes, the number of identity of genes are not exactly : same in each list. And each gene has it's own expresion value or : relationship. I would like to know which two lists with expression values : are closer or more similar. How can I get the answer? Which bioinformatic : tool can I use? Thanks.
h*****g 发帖数: 42	5 A couple of R packages might be useful for you OrderedList (in Bioconductor) RankAggreg Both packages work for the ranked list. exactly 【在 T********g 的大作中提到】 : I have three lists of genes, the number of identity of genes are not exactly : same in each list. And each gene has it's own expresion value or : relationship. I would like to know which two lists with expression values : are closer or more similar. How can I get the answer? Which bioinformatic : tool can I use? Thanks.

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相关主题
● NIH gene array bank	● 有没有同学用过一个叫GSEA（gene set enrichment analysis）的分析软件
● 请推荐一款text mining的工具	● 学R的书
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● 请教鼠基因在人细胞的表达	● 能用real time RT-PCR来比较同一细胞的不同gene的含量吗？
● 请教如何处理novel genes的GO enrichment analysis	● 能用real time RT-PCR来比较同一细胞的不同gene的含量吗？
● seeking recommendation for clustering analyses	● How to exactly define essential gene?
● transcription factor binding site missing	● hey here
● A difficult question	● 生物硕士能找什么样的工作？

相关话题的讨论汇总
话题: lists话题: expression话题: gene话题: each

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