b***g
发帖数: 516 | 1 请教大家用什么软件可以打开GFF3和GVF files？
谢谢！ |
s******y
发帖数: 137 | 2 Try Integrative Genomics Viewer,
never used gvf before though |
b***g
发帖数: 516 | |
b***g
发帖数: 516 | |
l**********1
发帖数: 5204 | 5 GVF2VCF
GVF to VCF file converter (currently beta)
The Genome Variation Format (GVF) is a file format for describing sequence
variants at nucleotide resolution relative to a reference genome. GVF dumps
are available from the Ensembl FTP site. However, many tools prefer to use
the 1000 Genomes VCF format (e.g. Genome Analysis Toolkit), so a converter
is often needed. This converter currently only supports output in VCF v4.0.
Large, inexact structural variants will therefore be skipped (v4.1 of VCF
now has support for these larger structural variants)
NOTE only tested with Ensembl COSMIC GVF human genome annotation. No
guarantees with other GVF files. Please let me know when you have problems
with other GVFs. Contributions and updates are welcome as well as shared
authorship.
//www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call
-format-version-40
//code.google.com/p/gvf2vcf/
//www.yandell-lab.org/software/VAAST_Quick-Start-Guide.pdf
//www.broadinstitute.org/igv/VCF
//www.broadinstitute.org/igv/viewing_vcf_files
【在 b***g 的大作中提到】
: 不行啊，打不开GVF ：（
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b***g
发帖数: 516 | 6 多谢楼上的！ 是老鼠的GVF，anyway我试下先！ |
l**********1
发帖数: 5204 | 7 De rien
【在 b***g 的大作中提到】
: 多谢楼上的！ 是老鼠的GVF，anyway我试下先！
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