G***G
发帖数: 16778 | 1 where to find all exons/introns for a gene?
I am looking for informations about exons/introns for a gene,
not for one of its transcripts.
For example, given a gene, can we tell how many exons it has totally?
What is exon1 and what is exon2? |
G***G
发帖数: 16778 | 2 any ideas? One baozi as reward.
【在 G***G 的大作中提到】
: where to find all exons/introns for a gene?
: I am looking for informations about exons/introns for a gene,
: not for one of its transcripts.
: For example, given a gene, can we tell how many exons it has totally?
: What is exon1 and what is exon2?
|
a******8
发帖数: 56 | 3 I use www.ensembl.org though I am not sure if I got your question clear. |
s******s
发帖数: 13035 | 4 你要多准确？一般的，各大网站不是都有？否则，就算seq出来的都不一定全
【在 G***G 的大作中提到】
: where to find all exons/introns for a gene?
: I am looking for informations about exons/introns for a gene,
: not for one of its transcripts.
: For example, given a gene, can we tell how many exons it has totally?
: What is exon1 and what is exon2?
|
g**********y
发帖数: 423 | 5 Ensenmble biomart.
You can get all interval (chr_pos) of exons. |
m*****u
发帖数: 15526 | 6 NCBI上就有。选gene。
【在 G***G 的大作中提到】
: where to find all exons/introns for a gene?
: I am looking for informations about exons/introns for a gene,
: not for one of its transcripts.
: For example, given a gene, can we tell how many exons it has totally?
: What is exon1 and what is exon2?
|
b****r
发帖数: 17995 | 7 我从来都是到USCS 先搜到mRNA，再blat基因组，然后看“details”
每个block是一个exon，又快又准又直观
包子pls |
j*p
发帖数: 411 | |
j******i
发帖数: 939 | 9 我前一阵也查了一个基因 结合使用UCSC-ensembl 步骤有点多 说起来麻烦 看这个中文
的教程 http://www.docin.com/p-47961045.html |
l**********1
发帖数: 5204 | 10 RE LZ
even nematode pls try more genome browsers As U Could,
never trust only one Genome broswer for exons identifications.
pls refer
Other genome browsers
Ensembl Metazoa
UCSC
NCBI
WormBase
HTTP: //www.ensembl.org/Caenorhabditis_elegans/Location/Genome
original hint was from Facebook:
HTTPS : //www.facebook.com/EMBLEBI
or
HTTP: //www.ensembl.info/blog/2013/02/07/ensembl-genomes-release-17/?utm_
source=rss&utm_medium=rss&utm_campaign=ensembl-genomes-release-17
【在 G***G 的大作中提到】
: where to find all exons/introns for a gene?
: I am looking for informations about exons/introns for a gene,
: not for one of its transcripts.
: For example, given a gene, can we tell how many exons it has totally?
: What is exon1 and what is exon2?
|
a**m
发帖数: 184 | 11 ucsc genome browser
give me the gene i ll look for it
baozi baozi
【在 G***G 的大作中提到】
: where to find all exons/introns for a gene?
: I am looking for informations about exons/introns for a gene,
: not for one of its transcripts.
: For example, given a gene, can we tell how many exons it has totally?
: What is exon1 and what is exon2?
|
a********h
发帖数: 245 | 12 对于预测的准确性要小心。很多时候不是很准确，或者只能预测一种transcript. |
G***G
发帖数: 16778 | 13 请问这些browser怎么能知道一个gene的所有exon呢?
而不是一个基因所有的transcript的对应的exons.
【在 l**********1 的大作中提到】
: RE LZ
: even nematode pls try more genome browsers As U Could,
: never trust only one Genome broswer for exons identifications.
: pls refer
: Other genome browsers
: Ensembl Metazoa
: UCSC
: NCBI
: WormBase
: HTTP: //www.ensembl.org/Caenorhabditis_elegans/Location/Genome
|
G***G
发帖数: 16778 | 14 我要的exon是一个基因对应的所有exon，并且按照顺序排列好。
而不是一个transcript的exons。
【在 g**********y 的大作中提到】
: Ensenmble biomart.
: You can get all interval (chr_pos) of exons.
|
