G***G 发帖数: 16778 | 1 where to find all exons/introns for a gene?
I am looking for informations about exons/introns for a gene,
not for one of its transcripts.
For example, given a gene, can we tell how many exons it has totally?
What is exon1 and what is exon2? |
G***G 发帖数: 16778 | 2 any ideas? One baozi as reward.
【在 G***G 的大作中提到】![](/moin_static193/solenoid/img/up.png) : where to find all exons/introns for a gene? : I am looking for informations about exons/introns for a gene, : not for one of its transcripts. : For example, given a gene, can we tell how many exons it has totally? : What is exon1 and what is exon2?
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a******8 发帖数: 56 | 3 I use www.ensembl.org though I am not sure if I got your question clear. |
s******s 发帖数: 13035 | 4 你要多准确?一般的,各大网站不是都有?否则,就算seq出来的都不一定全
【在 G***G 的大作中提到】![](/moin_static193/solenoid/img/up.png) : where to find all exons/introns for a gene? : I am looking for informations about exons/introns for a gene, : not for one of its transcripts. : For example, given a gene, can we tell how many exons it has totally? : What is exon1 and what is exon2?
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g**********y 发帖数: 423 | 5 Ensenmble biomart.
You can get all interval (chr_pos) of exons. |
m*****u 发帖数: 15526 | 6 NCBI上就有。选gene。
【在 G***G 的大作中提到】![](/moin_static193/solenoid/img/up.png) : where to find all exons/introns for a gene? : I am looking for informations about exons/introns for a gene, : not for one of its transcripts. : For example, given a gene, can we tell how many exons it has totally? : What is exon1 and what is exon2?
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b****r 发帖数: 17995 | 7 我从来都是到USCS 先搜到mRNA,再blat基因组,然后看“details”
每个block是一个exon,又快又准又直观
包子pls |
j*p 发帖数: 411 | |
j******i 发帖数: 939 | 9 我前一阵也查了一个基因 结合使用UCSC-ensembl 步骤有点多 说起来麻烦 看这个中文
的教程 http://www.docin.com/p-47961045.html |
l**********1 发帖数: 5204 | 10 RE LZ
even nematode pls try more genome browsers As U Could,
never trust only one Genome broswer for exons identifications.
pls refer
Other genome browsers
Ensembl Metazoa
UCSC
NCBI
WormBase
HTTP: //www.ensembl.org/Caenorhabditis_elegans/Location/Genome
original hint was from Facebook:
HTTPS : //www.facebook.com/EMBLEBI
or
HTTP: //www.ensembl.info/blog/2013/02/07/ensembl-genomes-release-17/?utm_
source=rss&utm_medium=rss&utm_campaign=ensembl-genomes-release-17
【在 G***G 的大作中提到】![](/moin_static193/solenoid/img/up.png) : where to find all exons/introns for a gene? : I am looking for informations about exons/introns for a gene, : not for one of its transcripts. : For example, given a gene, can we tell how many exons it has totally? : What is exon1 and what is exon2?
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a**m 发帖数: 184 | 11 ucsc genome browser
give me the gene i ll look for it
baozi baozi
【在 G***G 的大作中提到】![](/moin_static193/solenoid/img/up.png) : where to find all exons/introns for a gene? : I am looking for informations about exons/introns for a gene, : not for one of its transcripts. : For example, given a gene, can we tell how many exons it has totally? : What is exon1 and what is exon2?
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a********h 发帖数: 245 | 12 对于预测的准确性要小心。很多时候不是很准确,或者只能预测一种transcript. |
G***G 发帖数: 16778 | 13 请问这些browser怎么能知道一个gene的所有exon呢?
而不是一个基因所有的transcript的对应的exons.
【在 l**********1 的大作中提到】![](/moin_static193/solenoid/img/up.png) : RE LZ : even nematode pls try more genome browsers As U Could, : never trust only one Genome broswer for exons identifications. : pls refer : Other genome browsers : Ensembl Metazoa : UCSC : NCBI : WormBase : HTTP: //www.ensembl.org/Caenorhabditis_elegans/Location/Genome
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G***G 发帖数: 16778 | 14 我要的exon是一个基因对应的所有exon,并且按照顺序排列好。
而不是一个transcript的exons。
【在 g**********y 的大作中提到】![](/moin_static193/solenoid/img/up.png) : Ensenmble biomart. : You can get all interval (chr_pos) of exons.
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