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全部话题 - 话题: ncbi
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l****u
发帖数: 46
1
来自主题: Biology版 - NCBI 的 SRA 停了?
http://www.ncbi.nlm.nih.gov/sra
Sequence Read Archive (SRA) and Trace Archive repositories have been
discontinued
Due to budget constraints, NCBI will be discontinuing its Sequence Read
Archive (SRA) and Trace Archive repositories for high-throughput sequence
data. Closure of the databases will occur in phases. SRA and Trace will stop
accepting some types of submissions in the coming weeks, and all
submissions within the next 12 months. Over the next several months, NCBI
will be working with sta... 阅读全帖
P*********1
发帖数: 43
2
请问NCBI里上传了一个蛋白结构算作publication么?同时又把这个结构发表在journal
上了。请问NCBI库里上传的结构还能够一提么?文章少,希望凑数。
m**i
发帖数: 8296
3
【 以下文字转载自 astrology 讨论区 】
发信人: muai (暮霭:俯仰之间 Q *^O^* P 告别一年狗血~`), 信区: astrology
标 题: 哇哇哇哇!NCBI里找到的占星科技文!~`
发信站: BBS 未名空间站 (Sat Jan 29 01:06:27 2011, 美东)
刚刚看到的。。。思考占星是否伪科学的时候随手一搜。。。哇、哇、哇~`
J Clin Epidemiol. 2006 Sep;59(9):964-9. Epub 2006 Jul 11.
Testing multiple statistical hypotheses resulted in spurious associations: a
study of astrological signs and health.
Austin PC, Mamdani MM, Juurlink DN, Hux JE.
Institute for Clinical Evaluative Sciences, G1 06, 2075 Bayview Avenue,
Toronto, Ontario, M4... 阅读全帖
m**i
发帖数: 8296
4
【 以下文字转载自 astrology 讨论区 】
发信人: muai (暮霭:俯仰之间 Q *^O^* P 告别一年狗血~`), 信区: astrology
标 题: 哇哇哇哇!NCBI里找到的占星科技文!~`
发信站: BBS 未名空间站 (Sat Jan 29 01:06:27 2011, 美东)
刚刚看到的。。。思考占星是否伪科学的时候随手一搜。。。哇、哇、哇~`
J Clin Epidemiol. 2006 Sep;59(9):964-9. Epub 2006 Jul 11.
Testing multiple statistical hypotheses resulted in spurious associations: a
study of astrological signs and health.
Austin PC, Mamdani MM, Juurlink DN, Hux JE.
Institute for Clinical Evaluative Sciences, G1 06, 2075 Bayview Avenue,
Toronto, Ontario, M4... 阅读全帖
k*******3
发帖数: 1909
5
来自主题: Biology版 - NCBI homo sapien (human) genome sequence
在NCBI下载了human的Assembled_chromosomes
ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/Assembled_chromosomes/
可以看到对于每个染色体,都有三种fasta file,比如染色体20,有
hs_alt_Celera_chr20.fa
hs_alt_HuRef_chr20.fa
hs_ref_GRCH37_chr20.fa
这三种file里面的序列还不一样,请问是怎么回事?究竟哪个是human的第20条染色体的sequence呢?
谢谢。
G*****h
发帖数: 320
6
来自主题: Biology版 - 提交sequence到NCBI database.
Use "BankIt" for online submission of simple sequences.
You will need to register at NCBI to use BankIt.
See instruction at http://www.ncbi.nlm.nih.gov/WebSub/?tool=genbank
q****w
发帖数: 81
7
BTW, these articles were added by myself from PebMed since PMCID has been
assigned on them. Do I have a way to assign grants to articles when I
transfer the articles from PebMed to my NCBI pool?
Thanks!
M*P
发帖数: 6456
8
话说ncbi的应该都是铁饭碗吧?为什么还这么变态呢

★ 发自iPhone App: ChineseWeb 7.8
z***b
发帖数: 4667
9
来自主题: Faculty版 - 问一下NCBI的Bibliograph
是不是尽量列自己第一作者的文章啊
我有n多打酱油的文章,列进去之后把一作文章全分散开
搞得每页就1~2篇一座,这样是不是给人感觉很不好,没人会去数文章,对吧?
如果都删掉酱油文章的话,就那么10篇文章,是不是又让人觉得能力不够啊
NCBI里面怎么能把自己一座文章都列在前面,其他的都放后面啊?
谢谢
x**********g
发帖数: 327
10
请问哪里能找到中文医学期刊列表?不知道怎么用NCBI找。。。
多谢!
m*******e
发帖数: 175
11
来自主题: Immigration版 - 求ncbi上paper一篇,谢谢
Chemopreventive effect of sarcophine-diol on NOR-1-induced TPA-promoted
skin carcinogenesis in female HOS:HR-1 mice
http://www.ncbi.nlm.nih.gov/pubmed/23513714
m**i
发帖数: 8296
12
刚刚看到的。。。思考占星是否伪科学的时候随手一搜。。。哇、哇、哇~`
J Clin Epidemiol. 2006 Sep;59(9):964-9. Epub 2006 Jul 11.
Testing multiple statistical hypotheses resulted in spurious associations: a
study of astrological signs and health.
Austin PC, Mamdani MM, Juurlink DN, Hux JE.
Institute for Clinical Evaluative Sciences, G1 06, 2075 Bayview Avenue,
Toronto, Ontario, M4N 3M5 Canada. p**********[email protected]
Comment in:
* J Clin Epidemiol. 2006 Sep;59(9):871-2.
Abstract
OBJECTIVES: To illustrate how multiple hypotheses... 阅读全帖
R****n
发帖数: 708
13
最近申请一个实验室,让我读老板的三篇文章。NCBI一查老板有一百多篇,平均每年四
五篇。 马上博士毕业,这是不是薄厚,只是research assistant 3。老板说做得好就
转长期的。
c***3
发帖数: 251
14
来自主题: Biology版 - 怎么从ncbi大批量下载基因序列
我明白他的意思
他就要找一个基因,名字是固定的。
直接通过名字搜索,但是ncbi上结果出来400多个,他根据每一个结果的locus去下载序
列,发现序列长短不一,相似度也不是那么高。
所以他希望能够有个程序直接通过基因名字把所有相关序列都下载下来,然后根据序列
相似度聚类。
碰巧我这两天也在下载序列,不过我跟你需求不一样,我有locus列表,根据列表下载
序列。你要是不着急我可以过几天帮你弄弄

不同序列?还是你
k*******3
发帖数: 1909
15
来自主题: Biology版 - NCBI homo sapien (human) genome sequence
any difference between UCSC and NCBI?
e*******e
发帖数: 1837
16
来自主题: Biology版 - NCBI homo sapien (human) genome sequence
A little bit research would get you a long way. Please read the readme file
yourself before asking questions.
http://www.ncbi.nlm.nih.gov/genome/guide/human/release_notes.html#37.1assembly
http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=164325051&clade=mammal&org=Human&db=hg19
n***i
发帖数: 15
17
来自主题: Biology版 - NCBI curator
There are a couple openings for the curator positions in NCBI. Anybody knows
what they are doing?
e***o
发帖数: 344
18
来自主题: Biology版 - NCBI 的序列分析tool
记得NCBI有个比对批量序列的在线软件。因为有几百个序列,虽然序列很短,但是用
vector nti 分析起来还是太麻烦了。现在找不到了。不知道有哪位大虾知道在那里。
谢谢。
m******5
发帖数: 1383
m****n
发帖数: 1066
20
来自主题: Biology版 - 提交sequence到NCBI database.
克隆了一段3'UTR序列,也没发文章,想提交到NCBI database.
How to do it?
Thanks.
c*****8
发帖数: 49
21
来自主题: Biology版 - NCBI怎么不一样了
今天发现在NCBI找基因序列,发现网站的页面跟以前不一样了,序列也没找到。
请高人指点。
谢谢
x******m
发帖数: 736
22
比如这个地址 http://www.ncbi.nlm.nih.gov/gene/11138
是TBC1D8的链接,, 11138是什么意思?
l**********1
发帖数: 5204
23
ncbi Gene ID: 11138, updated on 6-Oct-2013
d**********t
发帖数: 20415
24
我才知道NCBI也有PI的招博士后的。。。
看名字像老毛子或者东欧的,大部分好像人品都挺一般
a********k
发帖数: 2273
25
Jun'07 - present Investigator, NCBI/NLM, National Institutes of
Health (NIH), Bethesda, MD
Jun'03 - Jun'07 Tenure-track Scientist, Lawrence Livermore National
Laboratory (LLNL), Livermore, CA
Jan'03 - Jun'07 Visiting Scientist, Department of Energy Joint Genome
Institute (JGI), Walnut Creek, CA
Jan'01 - Jun'03 Staff Scientist, Lawrence Berkeley National Laboratory (LBNL
), Berkeley, CA
Oct'99 - Dec'00 Postdoctoral Fellow, UC Berkeley, Berkeley, CA
1999 Ph.D., Physics and Mathematics, N... 阅读全帖
G***G
发帖数: 16778
26
来自主题: Biology版 - ncbi网站的记录如何一次导出
https://www.ncbi.nlm.nih.gov/pubmed?LinkName=gene_pubmed&from_uid=472
这个搜索有1052个记录。
如何一次导出这1052个记录?
谢谢!
t*****z
发帖数: 1598
r********e
发帖数: 100
r********e
发帖数: 100
l********w
发帖数: 289
30
来自主题: Biology版 - 求文章
学校的路由坏了,自己查不了啊啊啊啊啊啊啊
Intracranial infectious aneurysms: a comprehensive review
http://www.ncbi.nlm.nih.gov/pubmed/19322683
Intracranial microbial aneurysm (infectious aneurysm): current options for
diagnosis and management.
http://www.ncbi.nlm.nih.gov/pubmed/19322683
Current treatment of active infective endocarditis with brain complications
http://www.ncbi.nlm.nih.gov/pubmed/23553553
Infective endocarditis.
http://www.ncbi.nlm.nih.gov/pubmed/?term=24365290
Mycotic aneurysm: a rare and dreaded c... 阅读全帖
g******r
发帖数: 347
g******r
发帖数: 347
t***n
发帖数: 121
33
1. Curr Pharm Biotechnol. 2015;16(11):966-82.
Title : Process Development Strategies in Plant Molecular Farming.
http://www.ncbi.nlm.nih.gov/pubmed/26343135
3. Curr Protein Pept Sci. 2013 Nov;14(7):568-79.
Title : Heterologous production of peptides in plants: fusion proteins and
beyond.
http://www.ncbi.nlm.nih.gov/pubmed/23968345
4. Expert Opin Drug Deliv. 2015 Apr;12(4):653-67. doi: 10.1517/17425247.2015
.974546. Epub 2014 Oct 28.
Title: Elastin-like polypeptide for improved drug delivery for... 阅读全帖
p*******y
发帖数: 1064
l**********1
发帖数: 5204
35
ii,
Joshua M. Kaplan
http://dms.hms.harvard.edu/BBS/fac/Kaplan.php
PMID 21029864
Cell 143: 430-41. (2010)
http://www.ncbi.nlm.nih.gov/pubmed/21029864
or PMID 14981253
PNAS 101: 3190-5. (2004)
http://www.ncbi.nlm.nih.gov/pubmed/14981253
iii,
Sanford M. Simon
http://www.rockefeller.edu/research/faculty/labheads/SanfordSim
PMID 19563761
Cell. 137: 1308-19. (2009).
http://www.ncbi.nlm.nih.gov/pubmed/19563761
iv,
Linda Van Aelst NY CSHLab
http://www.cshl.edu/Faculty/van-aelst-linda-professor.html
P... 阅读全帖
k****s
发帖数: 1209
36
来自主题: Biology版 - 蜕皮素
原文在
http://www.skizit.biz/2013/07/21/ecdysone-insect-hormone-an-ind
Ecdysone Insect Hormone Switches on Disease
21 Jul 2013 | ECDYSONE
MORGELLONS:
INSECT HORMONE ECDYSONE TRIGGERS GENETIC CHANGES
TO BUILD NEW HAIR, SKIN, NAILS and CAUSE DISEASES
SkizitGesture-2013
Morgellons is a military grade entomological terror weapon being used to
torture and kill innocent civilians. The medical community has not been
informed about this disease and its complexity keeps it from being properly
identified, ... 阅读全帖
l***r
发帖数: 459
37
来自主题: Java版 - [转载] a question on XML parser
Sorry, I guess I didn't describe the problem clearly. The xml file looks like
this:

"NCBI_BlastOutput.dtd">

...


"NCBI_BlastOutput.dtd">

...


"NCBI_BlastOutput.dtd">

...
g******r
发帖数: 347
g***j
发帖数: 40861
39
来自主题: Biology版 - 文献求助 有连接
Thank you very much and have a good holiday!
s*****[email protected]
1.
Inhibition of Salmonella enterica by plant-associated pseudomonads in
vitro
and on sprouting alfalfa seed
http://www.ncbi.nlm.nih.gov/pubmed/16629011
2.
Effects of community versus single strain inoculants on the
biocontrol of
Salmonella and microbial community dynamics in alfalfa sprouts
http://www.ncbi.nlm.nih.gov/pubmed/15690802
3.
Scale-up seed decontamination process to inactivate Escherichia coli
O157:H7
and Salmonella Enter... 阅读全帖
r********e
发帖数: 100
g***j
发帖数: 40861
G******O
发帖数: 189
42
Deepsequencing结果没有找到?
Casey Bergman:
I was also unable to find the data associated with this paper. As such, I
have written to Nature to ask them to confirm whether the NGS data from
Obokata et al has indeed been deposited in a public database, as is required
by their “Availability of data and materials” policy. My letter is as
follows and was posted today 13-2-2014.
Dear Editor -
It has come to my attention that a recent paper published in your journal
that reports next-generation sequencing da... 阅读全帖
J***n
发帖数: 210
43

Such studies are all over. Although there might be an acute increase of
testosterone level, endurance training generally reduces testosterone level.
You conclusion that "耐力运动员的testosterone绝对比举重的多" only shows you
ignorance on this topic.
Here are some "studies" from my causal search...
Reproducibility of low resting testosterone concentrations in endurance
trained men.
http://www.ncbi.nlm.nih.gov/pubmed/8817130
"Previous reports indicate endurance trained (ET) men have low resting
testosterone c... 阅读全帖
g*****9
发帖数: 53
l**********1
发帖数: 5204
45
大鼠/欧洲野兔/水䶄/鸡 的MHC 是越外(性)交: 路边的野花 不采白不采) 好似后代越advantageous哦
欧洲野兔 MHC paper:
Homozygosity at a class II MHC locus depresses female
reproductive ability in European brown hares
PubMed link:
//www.ncbi.nlm.nih.gov/pubmed/20731776
Wiki:
//en.wikipedia.org/wiki/European_Hare
水䶄MHC paper:
Selection Maintains MHC Diversity through a Natural Population Bottleneck
//www.ncbi.nlm.nih.gov/pubmed/22323362
Wiki:
//en.wikipedia.org/wiki/European_Water_Vole
据说恐龙演化过来的鸟类中的鸡 MHC paper
PNAS (2011)
Th... 阅读全帖
l**********1
发帖数: 5204
46
来自主题: Biology版 - 米国来了七年,loser一个
Please refer below company CEO his resume:
//www.epitomics.com/about/about_management/
Epitomics dot Com CEO Guoliang Yu, Ph.D.
Dr. Guo-Liang is currently the Chairman and President of Epitomics, Inc. an
emerging biotech company dedicated to the development of innovative next-
generation monoclonal antibodies. Before starting Epitomics, he was the
Senior Vice-President of Research and Development in Mendel Biotechnology
Inc. Dr. Yu has broad technological and scientific experiences in many
aspec... 阅读全帖
l**********1
发帖数: 5204
47
来自主题: Biology版 - 关于synthetic biology
here you are:
A spatially distributed, signaling-transcription cascade robustly
discriminates between transient and sustained
ERK activities at the c-Fos system level:
//www.ncbi.nlm.nih.gov/pubmed/20493519
Stimulus-dependent MAPKs, ERK1/2 and ERK5, in DRG, motor neuron:
//www.ncbi.nlm.nih.gov/pubmed/21220101
Modeling review:
//www.ncbi.nlm.nih.gov/pubmed/16482094
Modeling cancer review:
//www.ncbi.nlm.nih.gov/pubmed/20836040
NGWet lab tools review:
//www.ncbi.nlm.nih.gov/pubmed/21999828
Conclus... 阅读全帖
l**********1
发帖数: 5204
48
Please refer
Harmonics of Circadian Gene Transcription in Mammals
PLoS Genet. 2009 April; 5(4): e1000442.
Published online 2009 April 3
Validation experiments show that 12-hour oscillatory transcripts occur in several other peripheral tissues
as well including heart, kidney, and lungs. These harmonics are lost ex vivo, as well as under restricted
feeding conditions. Taken in sum, these studies illustrate the importance of time sampling with respect to
multiple testing, suggest caution in use of ... 阅读全帖
l**********1
发帖数: 5204
49
来自主题: Biology版 - 今年IF点评与未来预测
Please keep in mind that original post
> 最初论文(publishe 50Y ago possible)
可能的时间跨度指1962-2011
any year is possible.
从最初投稿到accepted for publish
Cell 需时间 比N/S 长3~4倍
2006 Nobel winner
RNAi father: AZ Fire
//en.wikipedia.org/wiki/Andrew_Fire
RNAi within nematode
//www.ncbi.nlm.nih.gov/pubmed/10535731
over 13 month
N
//www.ncbi.nlm.nih.gov/pubmed/9486653
S
//www.ncbi.nlm.nih.gov/pubmed/1314423
both 4~5 month
不要说AZ Fire 以前没Cell 啊 至少有两篇
Cell. 1981 (3 Pt 2):555-61.
Inhibition of transcription factor ac... 阅读全帖
s******a
发帖数: 472
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